Recco: recombination analysis using cost optimization

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Recco: recombination analysis using cost optimization

MOTIVATION Recombination plays an important role in the evolution of many pathogens, such as HIV or malaria. Despite substantial prior work, there is still a pressing need for efficient and effective methods of detecting recombination and analyzing recombinant sequences. RESULTS We introduce Recco, a novel fast method that, given a multiple sequence alignment, scores the cost of obtaining one...

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ژورنال

عنوان ژورنال: Bioinformatics

سال: 2006

ISSN: 1460-2059,1367-4803

DOI: 10.1093/bioinformatics/btl057